@article { author = {Tafakori, Vida and Torktaz, Ibrahim and Doostmohammadi, Mohsen and Ahmadian, Gholamreza}, title = {Microbial cell surface display; its medical and environmental applications}, journal = {Iranian Journal of Biotechnology}, volume = {10}, number = {4}, pages = {231-239}, year = {2012}, publisher = {National Institute of Genetic Engineering and Biotechnology of Iran}, issn = {1728-3043}, eissn = {2322-2921}, doi = {}, abstract = {Cell-surface display is the expression of peptides and proteins on the surface of living cells by fusing them tofunctional components of cells which are exposed to the environment of cells. This strategy can be carriedout using different surface proteins of cells as anchoring motifs and different proteins from different sourcesas a passenger protein. It is a promising strategy for developing novel whole cell factories. Surface engineeredcells have many potential uses ranging from medical to environmental applications. This review focuses on different strategy and applications of microbial surface display. Display}, keywords = {Environmental,Medical,Microbial Surface Display}, url = {https://www.ijbiotech.com/article_7171.html}, eprint = {https://www.ijbiotech.com/article_7171_54a154fd2b34e89985489edeaf46bb3a.pdf} } @article { author = {Rasti, Mozhgan and Khatooni, Zahed and Mostafavi-Pour, Zoherh}, title = {Production and evaluation of polyclonal rabbit antihuman p53 antibody using bacterially expressed glutathione S-transferase-p53 fusion protein}, journal = {Iranian Journal of Biotechnology}, volume = {10}, number = {4}, pages = {240-248}, year = {2012}, publisher = {National Institute of Genetic Engineering and Biotechnology of Iran}, issn = {1728-3043}, eissn = {2322-2921}, doi = {}, abstract = {p53 is a key tumor suppressor gene that is targeted for inactivation during human tumorigenesis. In this study, we produced and characterized polyclonal antihuman p53 antibody. The cDNA encoding the completehuman p53 protein was cloned into pGEX-4T-1 and expressed in Escherichia coli as a fusion protein with Schistosoma japonicum glutathione S-transferase (GST). The rabbits were immunized with the purifiedp53 recombinant protein. The obtained antisera were purified to increase the specificity of recognition. Thesensitivity and specificity of the produced antibody was analyzed by enzyme-linked immunosorbent,immunoblot, immunofluorescence and chromatin immunoprecipitation assays. Enzyme-linked immunosorbent assay showed that immunization with purified GST-p53 produced the high titer (1:10000) polyclonal antibodies with high specificity. Anti-p53 antibody allowed the sensitive detection of native p53 protein in immunoblotting, immunofluorescence and chromatin immunoprecipitation assays. Our results showed that anti-GST-p53 antibody provides a good means for studying the p53 expression pattern and its binding ability to other proteins in tumors.}, keywords = {GST-p53,Tumor,Immunoassays,Antip53 antibody}, url = {https://www.ijbiotech.com/article_7180.html}, eprint = {https://www.ijbiotech.com/article_7180_c389df12c31ca6d18c3d23bb57b226ed.pdf} } @article { author = {Askari, Mohammad and Gorjipour, Fazel and Sharifi, Zohreh and Farajollahi, Mohammad Morad}, title = {Cloning, expression, purification and immunoreactivity analysis of gag derived protein p17 from HIV-1 CRF35 in fusion with thioredoxin from human subjects}, journal = {Iranian Journal of Biotechnology}, volume = {10}, number = {4}, pages = {249-254}, year = {2012}, publisher = {National Institute of Genetic Engineering and Biotechnology of Iran}, issn = {1728-3043}, eissn = {2322-2921}, doi = {}, abstract = {So far, recombinant antigens of HIV-1, the etiologic cause of Acquired Immunodeficiency Syndrome (AIDS), have been widely used for the diagnosis and vaccine development. P17 or the matrix protein formed by the proteolytic cleavage of gag is strongly antigenic and is as conserved and immunogenic as p24. In some cases, antibodies to p17 are more prevalent than antibodies to p24 and the decline in the level of p17 antibodies is an earlier prognostic marker for disease progression than decline in the level of antibodies to p24. The aim of this study was to clone and express the gag derived p17 protein in soluble form in E. coli and then assess the immunoreactivity of produced recombinant p17. DNA sequence encoding p17 matrix protein was cloned from PTZ-gag53-IR vector that has the complete gag polyprotein sequence. The T7-promoter-based expression system used in this study was TOPO directional cloning strategy that expressed p17 matrix protein in fusion with thioredoxin in E. Coli. Purification of produced recombinant protein has been done using Ni-NTA nickel chelating agarose beads. Sequencing result of the cloned sequence showed that it belongs to CRF35_AD subtype of HIV-1 which is highly prevalent in Iran and Afghanistan. The immunoreactivity of producedrecombinant p17 to sera from infected individuals showed 93.8% sensitivity and 100% specificity.}, keywords = {HIV-1 CRF35_AD,Cloning,Recombinant protein,p17 antigen,Fusion protein}, url = {https://www.ijbiotech.com/article_7177.html}, eprint = {https://www.ijbiotech.com/article_7177_be264ec9eae6e312ef0357f8e60c642f.pdf} } @article { author = {Karkhane, Ali Asghar and Yakhchali, Bagher and Rastgar Jazii, Ferdous and Hemmat, Jafar and Shariati, Parvin and Khodabandeh, Mahvash and Zomorodipoor, Alireza}, title = {Periplasmic expression of Bacillus thermocatenulatus lipase in Escherichia coli in presence of different signal sequences}, journal = {Iranian Journal of Biotechnology}, volume = {10}, number = {4}, pages = {255-262}, year = {2012}, publisher = {National Institute of Genetic Engineering and Biotechnology of Iran}, issn = {1728-3043}, eissn = {2322-2921}, doi = {}, abstract = {Efforts to express lipase in the periplasmic space of Escherichia coli have so far been unsuccessful andmost of the expressed recombinant lipases accumulate in the insoluble cell fraction. To evaluate the role ofnative and heterologous signal peptides in translocation of the lipase across the inner membrane of E. coli,the lipase gene (btl2) was cloned downstream of the native Bacillus signal peptide and also in fusion withthe pelB, ansB and ansB/asp signal peptides. For this purpose, four recombinant expression vectors (pYRKP.P, pYRKP.N, pYRKP. A and pYRKP.AA) were constructed and expressed in E. coli. Osmotic shock analysis showed that recombinant lipase was overexpressed as inclusion bodies in E. coli. The lipase inclusion bodies were subsequently solublized, refolded and purified using single column ion-exchange chromatography. To evaluate localization of lipase in the cell, the purified lipases were subjected to capillary isoelectric focusing and tandem mass spectrometry. Results showed that all signal peptides were able to direct the lipase from the cytoplasm into the periplasmic space of E. coli, because the periplasmic space of E. coli is not suitable for lipase folding, the translocated lipase aggregates in this space as inclusion bodies.}, keywords = {Bacillus thermocatenulatus Lipase,capillary isoelectric focusing,Inclusion bodies,Periplasmic space,Tandem mass spectrometry}, url = {https://www.ijbiotech.com/article_7164.html}, eprint = {https://www.ijbiotech.com/article_7164_cf7cdb23a04a72c97a1c08fa099988aa.pdf} } @article { author = {Ghomi Avili, Mohammad and Fazaelipoor, Mohammad Hassan and Jafari, Seyed Ali and Ataei, Seyed Ahmad}, title = {Comparison between batch and fed-batch production of rhamnolipid by Pseudomonas aeruginosa}, journal = {Iranian Journal of Biotechnology}, volume = {10}, number = {4}, pages = {263-269}, year = {2012}, publisher = {National Institute of Genetic Engineering and Biotechnology of Iran}, issn = {1728-3043}, eissn = {2322-2921}, doi = {}, abstract = {This paper presents a comparison between batch and three different sets of fed batch fermentations forrhamnolipid production by Pseudomonas aeruginosa. The batch run was performed with 500 ml of culturemedium having the initial glycerol and sodium nitrate concentrations of 30 and 8.3 g/l, respectively. For a fedbatch run with nitrogen source in feed, 250 ml of the nitrogen excluded culture medium was in the bioreactorinitially, and 250 ml culture medium containing 16.6 g/l sodium nitrate was fed to the bioreactor continuously.A similar procedure was repeated for fed batch runs with carbon, and phosphorus source in feed. Statisticalanalysis showed that fed batch runs were better than batch in term of rhamnolipid production, and amongthe fed batch runs the maximum amount of rhamnolipid. (4.12 g Rhamnose Equivalent/l) was for the fedbatch run with the carbon source in feed.}, keywords = {Pseudomonas aeruginosa,Rhamnolipid,Batch process,Fed batch process,statistical analysis}, url = {https://www.ijbiotech.com/article_7170.html}, eprint = {https://www.ijbiotech.com/article_7170_3fe58d25bcb7df9b9f758bb95e1a4f7d.pdf} } @article { author = {Esmaeli, Shahnaz and Allameh, Abdolamir and Emami Aleagha, Mohammad Sajad and Kazemnejad, Somaieh and Soleimani, Masoud}, title = {Expression of cytochrome P450 and glutathione S-transferase in human bone marrow mesenchymal stem cells}, journal = {Iranian Journal of Biotechnology}, volume = {10}, number = {4}, pages = {270-274}, year = {2012}, publisher = {National Institute of Genetic Engineering and Biotechnology of Iran}, issn = {1728-3043}, eissn = {2322-2921}, doi = {}, abstract = {Currently several studies are being carried out on various properties of mesenchymal stem cells (MSCs)however there are a few investigations about drug metabolizing properties of these cells. The aim of thisstudy was to measure the key factors involved in drug metabolism in human bone marrow MSCs. For thispurpose, cellular glutathione (GSH), glutathione Stransferase (GSTs) and cytochrome P450 class 3A4(CYP3A4) were detected in these cells. Results showed that CYP3A4 and GSTA1-1 mRNA are not detectable in MSCs however mRNA specific for GSTP1-1 was considerably expressed in MSCs. GSH content and GST activity was also detected in MSCs. These data suggest that human bone marrow MSCs possess the drug metabolizing activity which may be useful in handling drugs and chemotherapeutic agents passing to the bone marrow.}, keywords = {Human bone marrow mesenchymal stem cells,Drug metabolism,Glutathione S-transferases, cytochrome P450}, url = {https://www.ijbiotech.com/article_7187.html}, eprint = {https://www.ijbiotech.com/article_7187_3669cc20e7b5983c6b9ca1d2111dcfd1.pdf} } @article { author = {Hajinia, Elmira and Fatemi, Seyed Safa-ali and Karkhane, Ali Asghar and Safekordi, Ali Akbar and Yakhchali, Bagher}, title = {Optimization of secretory expression of recombinant hGM-CSF in high cell density cultivation of recombinant Escherichia coli using Taguchi statistical method}, journal = {Iranian Journal of Biotechnology}, volume = {10}, number = {4}, pages = {275-280}, year = {2012}, publisher = {National Institute of Genetic Engineering and Biotechnology of Iran}, issn = {1728-3043}, eissn = {2322-2921}, doi = {}, abstract = {Human granulocyte macrophage colony stimulating factor (hGM-CSF) has many therapeutic applications.In this study, in order to verify the purification process, the effect of carbon source, IPTG concentration andpost-induction time on the secretion of recombinant hGM-CSF into the culture medium by recombinantEscherichia coli during high cell density cultivation were evaluated by using the Taguchi statistical method. The results indicated that glucose, 1mM IPTG and a time of 6 h post-induction, represented optimum conditions. The secreted hGM-CSF, overall volumetric productivity and purified hGM-CSF were 373 mg/l, 18 mg/l/h and 63 mg/l, respectively.}, keywords = {Escherichia coli,Fed-batch,High cell density cultivation,Human granulocyte macrophage colony stimulating factor,optimization,Purification}, url = {https://www.ijbiotech.com/article_7190.html}, eprint = {https://www.ijbiotech.com/article_7190_57c232efb7cc443241a465c5edbddc02.pdf} }